Updated 2016-01-31 05:26:15 by escargo (Redirected from PDR)

Attributes  edit

contact
d e r i j k p at u i a dot u a dot a c dot b e

Projects  edit

Bioinformatics projects

I work in Bioinformatics and have made several applications in this field, that include a great deal of Tcl:
GenomeComb
a package designed for the analysis of complete genome data. It can be used to compare, annotate and especially filter the results of complete genome sequencing
novoSNP
finding SNPs and indels in resequencing projects
RnaViz
for drawing RNA secundary structure models
DCSE
multiple sequence alignment editor with structure information

Some as yet unreleased work or in progress
pedviewer
a tool for managing and analysing large pedigrees
biotcl

I also wrote some internal applications (that will probably not be released) includes
a LIMS system using tclhttpd
pac
automated analysis of STR genotyping

Other Projects

I produced several extensions to Tcl:
Extral
extra commands for Tcl
ClassyTcl and ClassyTk
object system, extra widgets, builder and some applications
interface
Tcl extension for defining interfaces
TclDBI
generic database access api
tclCompress
compress data in Tcl
tcldbm
dbm access from Tcl

and am still experimenting with some
opaque
using Tcl_Objects from Tcl

Also working on applications outside of bio
lights
an interface to the darcs versioning system